Packages

Analyzes data for embedded file types

A Rust crate for helping write structs as binary data using ✨macro magic✨

Derive macro for binwrite

YAY command-line tool for parsing, formatting, and transcoding YAY documents

A bitwise UTF-8 string inspection tool

A bioinformatics library for Rust. This library provides implementations of many algorithms and data structures that are useful for bioinformatics, but also in other fields.

The Solana verifiable data registry backing the did:bio DID method

Resolver and registry client for the did:bio DID method on Solana

A pure Rust library and CLI for the automated repair, preparation, and topology construction of biological macromolecules.

My utilities for reading and writing bioinformatics file formats

A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data

Bionic reading in terminal.

解析生物信息领域的基本数据结构，提供操纵这些数据的接口和构建一些统计模型。

Bit packed and well-typed biological sequences

"bio-seq-algos", Library of Algorithms about Biological Sequences

Derive macros for the bio-seq crate

Streaming bioinformatics data types

Biology-themed terminal animations: DNA/RNA matrix rain and rotating codon-aware helices.

A collection of common biomedical types for use in rust-bio and rust-htslib.

DNA and RNA sequence types and functions

Some tools that are 'internal' for now because they are insufficiently refined and unstable, but which are used by other 'public' crates.

Save and load common biology file formats

Install, run, and inspect computational biology and chemistry tools, e.g. AlphaFold, Boltz, RFdiffusion3, and ProteinMPNN

Utilities for bioinformatic analysis.

CLI tool for asserting properties of files in bioinformatics pipelines

Core types and traits for the bioassert assertion library

Delimited file (CSV/TSV) metric assertions for bioassert

Execution engine for bioassert assertion pipelines

File metric assertions for bioassert

(Partial) port of biocommons/bioutils to Rust

The original version of caching files is implemented in R as a part of Bioconductor project: https://www.bioconductor.org/packages/release/bioc/html/BiocFileCache.html

Scripts for parsing UniParc XML files downloaded from the Uniprot website into CSV files.

Terminal-native species atlas with cached images, range maps, and taxonomy browsing

Compare binary files using sequence alignment

Sequence alignment bindings for biodiff

Rust bindings for the WFA2 library

BDD-based algorithms for symbolic SCC detection in Boolean networks

Library for symbolic HCTL model checking on partially defined Boolean networks.

A simple thread-safe implementation of basic binary decision diagrams.

Library for working with models in the BMA format.

Library for working with parametrized Boolean networks.

A library for controlling parametrized Boolean networks.

Read, modify and write xml in tree-like structure. Supports UTF-16.

Reading and parsing env vars with defaults and structured types

Zero-copy, streaming-capable toolkit for reading and writing BIOPAC AcqKnowledge (.acq) files

A library for reading bioinformatics related files

Tools for sniffing, parsing, and manipulating common biological file formats.

Pure Rust translation of Bio-Formats — read/write scientific image formats

Rust bindings of Bioformats Java library

A collection of basic bioinformatics algorithms